مطالعه پویش کل ژنوم بر پایه‌ مدل هاپلوتیپ و تجزیه و تحلیل غنی‌سازی مجموعه-های ژنی مرتبط با سن اولین زایش در گاو نلور

Boligon A. A. and Albuquerque L. G. 2011. Genetic parameters and relationships of heifer pregnancy and age at first calving with weight gain, yearling and mature weight in Nelore cattle. Livestock Science, 141(1): 12-16.

Cai Z., Guldbrandtsen B., Lund M. S. and Sahana G. 2019. Prioritizing candidate genes for fertility in dairy cows using gene-based analysis, functional annotation and differential gene expression. BMC Genomics, 20(1): 255.

Cochran S. D., Cole J. B., Null D. J. and Hansen P. J. 2013. Discovery of single nucleotide polymorphisms in candidate genes associated with fertility and production traits in Holstein cattle. BMC Genetics, 7(14): 49.

Durinck S., Spellman P. T., Birney E. and Huber W. 2009. Mapping identifiers for the integration of genomic datasets with the R/bioconductor package biomaRt. Nature Protocols, 4: 1184-1191.

Fernández J. C., Pérez J. E., Herrera N., Martínez R., Bejarano D. and Rocha J. F. 2019. Genomic association study for age at first calving and calving interval in Romosinuano and Costeño con Cuernos cattle. Genetics and Molecular Research, 18­(2): 1-13.

Garrick D. J., Taylor J. F. and Fernando R. L. 2009. Deregressing estimated breeding values and weighting information for genomic regression analyses. Genetics Selection Evolution, 41(1):1.

Han Y. and Peñagaricano F. 2016. Unravelling the genomic architecture of bull fertility in Holstein cattle. BMC Genetics, 17: 143.

Hare H. D., Norman J. R. and Wright A. 2006. Trends in calving ages and calving intervals for dairy cattle breed in the United States. Journal of Dairy Science, 89: 365-370.

Honarvar M., Sadeghi M., Moradi-Shahrebabak H., Behzadi S. H., Mohammadi H. and Lavaf A. 2012. Study of Polymorphisms in the 5´ flanking region of the Ovine IGF-I gene in Zel sheep. World Applied Sciences Journal, 16(5): 726-728.

Hinrichs A. L., Larkin E. K. and Suarez B. K. 2009. Population stratification and patterns of linkage disequilibrium. Genetic Epidemiology, 33: 88-92.

Khaltabadi Farahani A. H., Mohammadi H., Moradi M. H., Ghasemi H. A. and Hajkhodadadi I. 2020. Gene set enrichment analysis using genome-wide association study to identify genes and pathways associated with litter size in various sheep breeds. Animal Production Research, 9(3): 47-57. (In Persian).

Li J., Liu J., Campanile G., Plastow G., Zhang C., Wang Z., Cassandro M., Gasparrini B., Salzano A., Hua G., Liang A. and Yang L. 2018. Novel insights into the genetic basis of buffalo reproductive performance. BMC Genomics, 19(1): 814.

Marques D. B. D., Bastiaansen J. W. M., Broekhuijse M. L. W. J., Lopes M. S., Knol E. F., Harlizius B., Guimarães S. E. F., Silva F. F. and Lopes P. S. 2018. Weighted single-step GWAS and gene network analysis reveal new candidate genes for semen traits in pigs. Genetics Selection Evolution, 50(1): 40.

Magnabosco C. U, Lopes F. B., Magalhaes Rosa G. J. and Sainz R. D. 2016. Bayesian estimates of genetic parameters for reproductive traits in Nellore cows raised on pasture in tropical regions. Revista Colombiana de Ciencias Pecuarias, 29­(2): 119-129.

Mohammadi A., Alijani S., Rafat S. A. and Abdollahi-Arpanahi R. 2020. Genome-wide association study and pathway analysis for female fertility traits in Iranian Holstein cattle. Annals of Animal Science, 20(3): 825-851.

Mota R. R., Guimarães S. E. F., Fortes M. R. S., Hayes B., Silva F. F. and Verardo L.L. 2017. Genome-wide association study and annotating candidate gene networks affecting age at first calving in Nellore cattle. Journal of Animal Breeding and Genetics, 134(6): 484-492.

Mota L. F. M., Lopes F. B., Fernandes G. A., Rosa G. J. M., Magalhães A. F. B., Carvalheiro R. and Albuquerque L. G. 2020. Genome-wide scan highlights the role of candidate genes on phenotypic plasticity for age at first calving in Nellore heifers. Scientific Reports, 10(1): 6481.

Nascimento A. V. D., Romero A. Ã. R. D. S., Utsunomiya Y. T., Utsunomiya A. T. H., Cardoso D. F. and Neves H. H. R. 2018. Genome-wide association study using haplotype alleles for the evaluation of reproductive traits in Nelore cattle. PLoS ONE, 13­(8): e0201876.

Ortega M. S., Denicol A. C., Cole J. B., Null D. J. and Hansen P. J. 2016. Use of single nucleotide polymorphisms in candidate genes associated with daughter pregnancy rate for prediction of genetic merit for reproduction in Holstein cows. Animal Genetics, 47(3): 288-297.

Peñagaricano F., Weigel K. A., Rosa G. J. and Khatib H. 2013. Inferring quantitative trait pathways associated with bull fertility from a genome-wide association study. Frontiers in Genetics, 3: 307-314. 

Raza S. H. A., Khan R., Gui L., Schreurs N. M., Wang X., Mei C., Yang X., Gong C. and Zan L. 2020. Bioinformatics analysis and genetic polymorphisms in genomic region of the bovine SH2B2 gene and their associations with molecular breeding for body size traits in Qinchuan beef cattle. Bioscience Reports, 40(3): BSR20192113.

Sharma A., Lee J. S., Dang C. G., Sudrajad P., Kim H. C., Yeon S. H., Kang H. S. and Lee S. H. 2015. Stories and Challenges of Genome Wide Association Studies in Livestock-A Review. Asian-Australasian Journal of Animal Science, 28(10): 1371-1379.

Scheet P. and Stephens M. 2006. A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase. American Journal of Human Genetics, 78(4): 629-644.

Sigdel A., Liu L., Abdollahi-Arpanahi R., Aguilar I. and Peñagaricano F. 2020. Genetic dissection of reproductive performance of dairy cows under heat stress. Animal Genetics, 51(4): 511-520.

Utsunomiya Y. T., Milanesi M., Utsunomiya A. T., Ajmone-Marsan P. and Garcia J. F. 2016. GHap: An R package for Genome-wide Haplotyping. Bioinformatics, 32(18): 2861-2862.

Young M. D., Wakefield M. J., Smyth G. K. and Oshlack A. 2010. Method gene ontology analysis for RNA-seq: Accounting for selection bias. Genome Biology, 11: 14-23.