ردیابی نشانه های انتخاب مثبت مرتبط با صفات مهم اقتصادی در نژادهای گوسفند ایرانی (زندی) و مصری (بارکی و راهمنی) با استفاده از روش hapFLK

Asadollahpour Nanaei, H., Kharrati-Koopaee, H., & Esmailizadeh A. (2022). Genetic diversity and signatures of selection for heat tolerance and immune response in Iranian native chickens. BMC Genomics, 23(1): 224. doi: 10.1186/s12864-022-08434-7

Azizpour, N., Khaltabadi Farahani, A. H., Moradi, M., & Mohammadi, H. (2020). Genome-wide association study based on gene-set enrichment analysis associated with milk yield in Holstein cattle. Journal of Animal Science Research, 30(1), 79-92. doi: 10.22034/AS.2021.46637.1621 [In Persian]

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Chang, C. C., Chow, C. C., Tellier, L. C., Vattikuti, S., Purcell, S. M., & Lee, J. J. (2015). Second-Generation PLINK: Rising to the challenge of larger and richer datasets. Gigascience, 4, 7. doi: 10.1186/s13742-015-0047-8

Chen, Q., Wang, Z., Sun, J., Huang, Y., Hanif, Q., Liao, Y., & Lei, C. (2020). Identification of genomic characteristics and selective signals in a Du'an goat flock. Animals (Basel), 10(6), 994. doi: 10.3390/ani10060994

El-Halawany, N., Zhou, X., Al-Tohamy, A. F., El-Sayd, Y. A., Shawky, A. E., Michal, J. J., & Jiang, Z. (2016). Genome-wide screening of candidate genes for improving fertility in Egyptian native Rahmani sheep. Animal Genetics, 47(4), 513. doi: 10.1111/age.12437

Fariello, M. I., Boitard, S., Naya, H., SanCristobal, M., & Servin, B. (2013). Detecting signatures of selection through haplotype differentiation among hierarchically structured populations. Genetics, 193(3), 929-941. doi: 10.1534/genetics.112.147231.

Giacopelli, F., Cappato, S., Tonachini, L., Mura, M., Di Lascio, S., Fornasari, D., Ravazzolo, R., & Bocciardi, R. (2013). Identification and characterization of regulatory elements in the promoter of ACVR1, the gene mutated in Fibrodysplasia Ossificans Progressiva. Orphanet Journal of Rare Diseases, 8, 145. doi: 10.1186/1750-1172-8-145

Gutiérrez-Gil, B., Pérez, J., Alvarez, L., Martínez-Valladares, M., de la Fuente, L. F., Bayón, Y., Meana, A., San Primitivo, F., Rojo-Vázquez, F. A., & Arranz, J. J. (2009). Quantitative trait loci for resistance to trichostrongylid infection in Spanish Churra sheep. Genetics Selection Evolution, 41(1), 46. doi: 10.1186/1297-9686-41-46

Han, B., Wang, H., Zhang, J., & Tian, J. (2020). FNDC3B is associated with ER stress and poor prognosis in cervical cancer. Oncology Letters, 19(1), 406-414. doi: 10.3892/ol.2019.11098

Isabelle, C. M., & Picard, B. (2016). Expression marker-based strategy to improve beef quality. The Scientific World Journal, 3, 1-11. doi: 10.1155/2016/2185323

Khalifa, E. I., Ahmed, M. E., Hafez, Y. H., El-Zolaky, O. A., Bahera, K. M., & Abido, A. A. (2013). Age at puberty and fertility of Rahmani sheep fed on biological inoculated corn silage. Annals of Agricultural Sciences, 58(2), 163-172.  doi.org/10.1016/j.aoas.2013.07.003

Khaltabadi Farahani, A. H., Mohammadi, H., & Moradi, H. (2020). Gene set enrichment analysis using genome-wide association study to identify genes and pathways associated with litter size in various sheep breeds. Animal Production, 22(3), 325-335. doi:10.22059/jap.2020.292715.623468 [In Persian]

Kijas, J. W., Lenstra, J. A., Hayes, B., Boitard, S., Porto Neto, L. R., San Cristobal, M., Servin, B., McCulloch, R., Whan, V., McEwan, J., & Dalrymple, B. (2012). International Sheep Genomics Consortium Members. Genome-wide analysis of the world's sheep breeds reveals high levels of historic mixture and strong recent selection. PLoS Biology, 10(2), e1001258. doi: 10.1371/journal.pbio.1001258

Leroy, G., Baumung, R., Boettcher, P., Besbes, B., From, T., & Hoffmann, I. (2018). Animal genetic resources diversity and ecosystem services. Global Food Security, 17, 84-91. doi: 10.1002/ecy.3745

McBride, D., Carré, W., Sontakke, S. D., Hogg, C. O., & Law, A. (2012). Identification of miRNAs associated with the follicular-luteal transition in the ruminant ovary. Reproduction, 144, 221-233. doi: 10.1530/REP-12-0025

Mohammadi, H., Khaltabadi Farahani, H. K., Moradi, M. H., Mastrangelo, S., Di Gerlando, R., Sardina, M. T., Scatassa, M. L., Portolano, B., & Tolone, M. (2022). Weighted single-step genome-wide association study uncovers known and novel candidate genomic regions for milk production traits and somatic cell score in Valle del Belice dairy sheep. Animals (Basel), 12(9), 1155. doi: 10.3390/ani12091155

Patiabadi, Z., Razmkabir, M., Esmailizadeh Koshkoiyeh, A., Moradi, M. H., & Rashidi, A. (2023). Genomic scanning of selection signature in Iranian skin and wool sheep using FST unbiased estimator and hapFLK methods. Animal Production Research, 12(2), 85-103. doi: 10.22124/ar.2023.22903.1721 [In Persian]

Rostamzadeh Mahdabi, E., Esmailizadeh, A., Ayatollahi Mehrgardi, A., & Asadi Fozi, M. (2021). A genome-wide scan to identify signatures of selection in two Iranian indigenous chicken ecotypes. Genetics Selection Evolution, 53(1), 72. doi: 10.1186/s12711-021-00664-9

Sabeti, P. C., Schaffner, S. F., Fry, B., Lohmueller, J., Varilly, P., Shamovsky, O., & Lander, E. (2006). Positive natural selection in the human lineage. Science, 312(5780), 1614-1620. doi: 10.1126/science.1124309

Saravanan, K. A., Panigrahi, M., Kumar, H., Parida, S., Bhushan, B., Gaur, G. K., Dutt, T., Mishra, B. P., & Singh, R. K. (2021). Genomic scans for selection signatures revealed candidate genes for adaptation and production traits in a variety of cattle breeds. Genomics, 113(3), 955-963. doi: 10.1016/j.ygeno.2021.02.009

Shimizu, T., Jayawardana, B. C., Nishimoto, H., Kaneko, E., Tetsuka, M., & Miyamoto, A. (2006). Involvement of the bone morphogenetic protein/receptor system during follicle development in the bovine ovary: hormonal regulation of the expression of bone morphogenetic protein 7 (BMP-7) and its receptors (ACTRI and ALK-2). Molecular and Cellular Endocrinology, 249, 78-83. doi: 10.1016/j.mce.2006.01.015

Tenghe, A. M. M., Bouwman, A. C., Berglund, B., Strandberg, E., de Koning, D. J., & Veerkamp, R. F. (2016). Genome wide association study for endocrine fertility traits using single nucleotide polymorphism arrays and sequence variants in dairy cattle. Journal of Dairy Science, 99(7), 5470-5485. doi: 10.3168/jds.2015-10533

Wang, X., Liu, J., Zhou, G., Guo, J., Yan, H., Niu, Y., Li, Y., Yuan, C., Geng, R., Lan, X., An, X., Tian, X., Zhou, H., Song, J., Jiang, Y., & Chen, Y. (2016). Whole-genome sequencing of eight goat populations for the detection of selection signatures underlying production and adaptive traits. Scientific Reports, 6, 38932. doi: 10.1038/srep38932

Waineina, R. W., Okeno, T. O., Ilatsia, E. D., & Ngeno, K. (2022). Selection signature analyses revealed genes associated with adaptation, production, and reproduction in selected goat breeds in Kenya. Frontiers in Genetics, 13, 858923. doi: 10.3389/fgene.2022.858923

Wang, P., Li, X., Zhu, Y., Wei, J., Zhang, C., Kong, Q., Nie, X., Zhang, Q., & Wang, Z. (2022). Genome-wide association analysis of milk production, somatic cell score, and body conformation traits in Holstein cows. Frontiers in Veterinary Science, 9, 932034. doi: 10.3389/fvets.2022.932034

Yurchenko, A. A., Daetwyler, H. D., Yudin, N., Schnabel, R. D., Vander Jagt, C. J., Soloshenko, V., Lhasaranov, B., Popov, R., Taylor, J. F., & Larkin, D. M. (2018). Scans for signatures of selection in Russian cattle breed genomes reveal new candidate genes for environmental adaptation and acclimation. Scientific Reports, 8(1), 12984. doi: 10.1038/s41598-018-31304-w

Zhang, Y. E. (2017). Non-Smad signaling pathways of the TGF- family. Cold Spring Harbor Perspectives in Biology, 9, 56-71. doi: 10.1101/cshperspect.a02212

Zhang, Z., Sui, Z., Zhang, J., Li, Q., Zhang, Y., Wang, C., Li, X., & Xing, F. (2022). Identification of signatures of selection for litter size and pubertal initiation in two sheep populations. Animals (Basel), 12(19), 2520. doi: 10.3390/ani12192520

Zhao, F., Deng, T., Shi, L., Wang, W., Zhang, Q., Du, L., & Wang, L. (2020). Genomic scan for selection signature reveals fat deposition in Chinese indigenous sheep with extreme tail types. Animals (Basel), 10(5), 773. doi: 10.3390/ani10050773