شناسایی نشانه های انتخاب مرتبط با آترزی دستگاه گوارش در گوساله های هلشتاین

Abbasi Moshaii, B. (2018). Genomic scan for selection signatures and identification of some candidate regions associated with mastitis in German Holstein cattle. Ph.D. Thesis, Sari Agricultural Sciences and Natural Resources University, Iran. [In Persian]

Akey, J. M., Zhang, G., Zhang, K., Jin, L., & Shriver, M. D. (2002). Interrogating a high-density SNP map for signatures of natural selection. Genome Research, 12(12), 1805-1814. doi: 10.1101/gr.631202

Azizi, S., Mohammadi, R., & Mohammadpour, I. (2010). Surgical repair and management of congenital intestinal atresia in 68 calves. Veterinary Surgery, 39, 115-120. doi: 10.1111/j.1532-950X.2009.00611.x

Azizpour, N., Khaltabadi Farahani, A. H., Moradi, M. H., & Mohammadi, H. (2020). Genome-wide association study based on gene-set enrichment analysis associated with milk yield in Holstein cattle. Journal of Animal Science Research, 30(1), 79-92. doi: 10.22034/AS.2020.11009 [In Persian]

Bagheri, M., Mirai-Ashtiani, R., Moradi-Shahrbabak, M., Nejati-Javaremi, A., Pakdel, A., Von Borstel, U. U., Pimentel, E. C. G., & König, S. 2013. Selective genotyping and logistic regression analyses to identify favorable SNP-genotypes for clinical mastitis and production traits in Holstein dairy cattle. Livestock Science, 151, 140-151. doi: 10.1016/j.livsci.2012.11.018

Canive, M., González-Recio, O., Fernández, A., Vázquez, P., Badia-Bringué, G., & Lavín, J. L. (2021). Identification of loci associated with susceptibility to Mycobacterium avium subsp. paratuberculosis infection in Holstein cattle using combinations of diagnostic tests and imputed whole-genome sequence data. PLoS One, 16(8), e0256091. doi: 10.1371/journal.pone.0256091

Carthy, T. R., Keane, O. M., Hanrahan, J. P., Matthews, D., McEwan, J., Rowe, S., & Mee, J. (2022). Investigation of Intestinal Atresia in a Jersey Sire Family. In: Proceeding of 12^th World Congress on Genetics Applied to Livestock Production 3-8 July. Netherlands, Pp. 11-14.

Huang, D. W., Sherman, B. T., & Lempicki, R. A. (2009). Systematic and integrative analysis of large gene lists using DAVID Bioinformatics Resources. Nature Protocols, 4(1), 44-57. doi: 10.1038/nprot.2008.211

Javan Nikkhah, M. (2019). Identification of selective signatures associated with resistance to bovine leukosis (BLV) in Iranian Holstein cows. Ph.D. Thesis, University of Tehran, Iran. [In Persian]

Jin, Q., Wang, C., Li, X., Yu, M., Zhao, S. H., & Li, X. (2013). Molecular characterization and genome-wide mutations in porcine anal atresia candidate gene GLI2. Mammalian Genome, 24, 500-507. doi: 10.1007/s00335-013-9485-8

Jahuey‐Martínez, F. J., Parra‐Bracamonte, G. M., Sifuentes‐Rincón, A. M., & Moreno‐Medina, V. R. (2019). Signatures of selection in Charolais beef cattle identified by genome‐wide analysis. Journal of Animal Breeding and Genetics, 136(5), 378-389. doi: 10.1111/jbg.12399

Keane, O. M., Carthy, T. R., Hanrahan, J. P., Matthews, D., McEwan, J. C., & Rowe, S. J. (2023). Risk factors for, and genetic association with, intestinal atresia in dairy calves. Animal Genetics, 4, 104-112. doi: 10.1111/age.13291

Kim, H., Song, K. D., Kim, H. J., Park, W., Kim, J., & Lee, T. (2015). Exploring the genetic signature of body size in Yucatan Miniature pig. PLoS One, 10(4), e0121732. doi: 10.1371/journal.pone.0121732

Lejeune, B., Miclard, J., Stoffel, M. H., & Meylan, M. (2011). Intestinal atresia and ectopia in a bovine fetus. Veterinary Pathology, 48, 830-833. doi: 10.1177/0300985810383872

Li, S., Wang, X., Qu, L., Dou, T., & Wang, K. (2018). Genome-wide association studies for small intestine length in an F₂ population of chickens. Italian Journal of Animal Science, 17(2), 294-300. doi: 10.1080/1828051X.2017.1368419

Lin, S., Wan, Z., Zhang, J., Xu, L., Han, B., & Sun, D. (2020). Genome-wide association studies for the concentration of albumin in colostrum and serum in Chinese Holstein. Animals, 10(12), 2211.‏ doi: 10.3390/ani10122211

Loureiro, B., Block, J., Favoreto, M. G., Carambula, S., Pennington, K. A., Ealy, A. D., & Hansen, P. J. (2011a). Consequences of conceptus exposure to colony-stimulating factor 2 on survival, elongation, interferon-τ secretion, and gene expression. Reproduction, 41(5), 617-624. doi: 10.1530/REP-10-0511

Loureiro, B., Oliveira, L. J., Favoreto, M. G., & Hansen, P. J. (2011b). Colony-stimulating factor 2 inhibits induction of apoptosis in the bovine preimplantation embryo. American Journal of Reproduction Immunology, 65, 578-588. doi: 10.1111/j.1600-0897.2010.00953.x

Mokhber, M., Moradi-Shahrbabak, M., Sadeghi, M., Moradi-Shahrbabak, H., Stella, A., Nicolazzi, E., Rahmaninia, J., & Williams, J. L. (2018). A genome-wide scan for signatures of selection in Azeri and Khuzestani buffalo breeds. BMC Genomics, 19(1), 449. doi: 10.1186/s12864-018-4759-x

Mohammadi, H., Rafat, S. A., Moradi Shahrbabak, H., Shodja, J., & Moradi, M. H. (2020). Genome-wide association study and gene ontology for growth and wool characteristics in Zandi sheep. Journal of Livestock Science and Technologies, 8(2), 45-55. doi: 10.22103/JLST.2020.15795.1317

Purcell, S., Neale, B., Todd-Brown, K., Thomas, L., Ferreira, M. A., Bender, D., Maller, J., Sklar, P., de Bakker, P. I., Daly, M. J., & Sham, P. C. (2007). PLINK: a tool set for whole-genome association and population-based linkage analyses. American Journal of Human Genetics, 81(3), 559-575. doi: 10.1086/519795

Pum, A., Ennemoser, M., Gerlza, T., & Kung, A. J. (2022). The role of heparan sulfate in CCL26-induced eosinophil chemotaxis. International Journal of Molecular Science, 23(12), 6519. doi: 10.3390/ijms23126519

Quick, A. E., Ollivett, T. L., Kirkpatrick, B. W., & Weigel, K. A. (2020). Genomic analysis of bovine respiratory disease and lung consolidation in preweaned Holstein calves using clinical scoring and lung ultrasound. Journal of Dairy Science, 103(2), 1632-1641. doi: 10.3168/jds.2019-16531

Robbins, C. M., Tembe, W. A., Baker, A., Sinari, S., Moses, T. Y., Beckstrom-Sternberg, S., Beckstrom-Sternberg, J., Barrett, M., & Carpten, J. D. (2011). Copy number and targeted mutational analysis reveals novel somatic events in metastatic prostate tumors. Genome Research, 21(1), 47-55. doi: 10.1101/gr.107961.110

Rostamzadeh Mahdabi, E., Esmailizadeh, A., Ayatollahi Mehrgardi, A., & Asadi Fozi, M. (2021). A genome-wide scan to identify signatures of selection in two Iranian indigenous chicken ecotypes. Genetic Selection Evolution, 53(1), 72. doi: 10.1186/s12711-022-00720-y

Sanchez, M. P., Guatteo, R., Davergne, A., Saout, J., Grohs, C., Deloche, M. C., Taussat, S., Fourichon, C., & Boichard, D. (2020). Identification of the ABCC4, IER3, and CBFA2T2 candidate genes for resistance to paratuberculosis from sequence-based GWAS in Holstein and Normande dairy cattle. Genetic Selection Evolution, 52(1), 14. doi: 10.1186/s12711-020-00535-9

Saravanan, K. A., Panigrahi, M., Kumar, H., Parida, S., Bhushan, B., Gaur, G. K., Dutt, T., Mishra, B. P., & Singh, R. K. (2021). Genomic scans for selection signatures revealed candidate genes for adaptation and production traits in a variety of cattle breeds. Genomics, 113(3), 955-963. doi: 10.1016/j.ygeno.2021.02.009

Vardi, I., Barel, O., Sperber, M., Schvimer, M., Nunberg, M., Field, M. Ouahed, J., Marek-Yagel, D., Weiss, B., & Shouval, D. S. (2018). Genetic and structural analysis of a SKIV2L mutation causing tricho-hepato-enteric syndrome. Digestive Diseases and Sciences, 63(5), 1192-1199. doi: 10.1007/s10620-018-4983-x

Weir, B. S., & Cockerham, C. C. (1984). Estimating F‐statistics for the analysis of population structure. Evolution, 38(6), 1358-1370. doi: 10.1111/j.1558-5646.1984.tb05657.x

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Yurchenko, A. A., Daetwyler, H. D., Yudin, N., Schnabel, R. D., Vander Jagt, C. J., Soloshenko, V., Lhasaranov, B., Popov, R., Taylor, J. F., & Larkin, D. M. (2018). Scans for signatures of selection in Russian cattle breed genomes reveal new candidate genes for environmental adaptation and acclimation. Scientific Reports, 8(1), 12984. doi: 10.1038/s41598-018-31304-w

Zhao, F., McParland, S., Kearney, F., Du, L., & Berry, D. P. (2015). Detection of selection signatures in dairy and beef cattle using high-density genomic information. Genetics Selection Evolution, 47(1), 49. doi: 10.1186/s12711-015-0127-3