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تجزیه و تحلیل غنی سازی مجموعه های ژنی با استفاده از مطالعه گسترده پویش ژنوم برای شناسایی ژن ها و مسیرهای زیستی مرتبط با دوقلوزایی در گوسفند بلوچی | ||
| تحقیقات تولیدات دامی | ||
| مقاله 7، دوره 8، شماره 2، شهریور 1398، صفحه 63-80 اصل مقاله (1.34 M) | ||
| نوع مقاله: مقاله پژوهشی | ||
| شناسه دیجیتال (DOI): 10.22124/ar.2019.11948.1365 | ||
| نویسندگان | ||
| سید مهدی اسماعیلی فرد1؛ سید حسن حافظیان* 2؛ محسن قلی زاده3؛ رستم عبدالهی آرپناهی4 | ||
| 1دانشجوی دکتری دانشکده علوم دامی و شیلات، دانشگاه علوم کشاورزی و منابع طبیعی ساری | ||
| 2دانشیار دانشکده علوم دامی و شیلات دانشگاه علوم کشاورزی و منابع طبیعی ساری | ||
| 3استادیار دانشکده علوم دامی و شیلات دانشگاه علوم کشاورزی و منابع طبیعی ساری | ||
| 4استادیار دانشکده علوم دامی، پردیس ابوریحان، دانشگاه تهران | ||
| چکیده | ||
| گوسفند بلوچی یکی از نژادهای بومی ایران است که از شرق کشور منشا گرفته و با شرایط آب و هوایی آن منطقه سازگار شده است. بازده اقتصادی اصلاح نژاد گوسفند به طور واضحی با بازده تولیدمثل میشها مرتبط است. در این پژوهش، صفت دوقلوزایی به عنوان یک صفت تولیدمثلی مهم مورد بررسی قرار گرفت. جهت انجام این پژوهش از دادههای ژنوتیپی 91 راس میش بلوچی که با استفاده از ریزآرایه گوسفندی 50k شرکت ایلومینا تعیین ژنوتیپ شده بودند، جهت پویش ژنوم و شناسایی ژنهای مرتبط با دوقلوزایی استفاده شد. بدین منظور از مدل تکرارپذیری تعمیم یافته استفاده شد. در مرحله بعد، از تجزیه غنیسازی مجموعههای ژنی جهت شناسایی طبقات عملکردی مرتبط با دوقلوزایی استفاده شد. در این پژوهش تعداد شش نشانگر SNP واقع بر کروموزومهای 1، 3، 10، 15 و 25 شناسایی شدند که با ژنهای CTH، ANKRD13C، SRSF11، PTGER3، LDHB، LRRC40 و KCNMA1 مرتبط بودند. همچنین در تجزیه غنیسازی مجموعههای ژنی، تعداد 25 مسیر با صفت دوقلوزایی مرتبط بودند (p <0.01). از این میان، مسیر defense response نقش مهمی در فرآیند تخمک‌ریزی دارد. عمده پروتئین‌های این مسیر، اینترفرون‌ها و اینترلوکین‌ها هستند که با ایجاد فرآیندی مشابه التهاب سبب رهاسازی تخمک در اویداکت می‌شوند. مسیرهای مربوط به چسبندگی سلولی مانند cell adhesion و مسیرهای ارتباط سلولی مانند intercellular bridge و cell junction از دیگر مسیرهای معنی‌دار بودند. مسیر cell junction به واسطه پروتئین کانکسین CX43 سبب انتقال اثر GDF9 به سلولهای گرانولوزا میشود. نتیجه این پژوهش اولین گزارش از اثر غیر مستقیم GDF9 بر صفت دوقلوزایی در گوسفندان ایرانی است. | ||
| کلیدواژه‌ها | ||
| دوقلوزایی؛ گوسفند بلوچی؛ SNP؛ GSEA-SNP؛ GWAS | ||
| مراجع | ||
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